48 lines
1.1 KiB
Docker
48 lines
1.1 KiB
Docker
FROM python:3.12-slim
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ENV PYTHONDONTWRITEBYTECODE=1
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ENV PYTHONUNBUFFERED=1
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ENV NP_HOST=0.0.0.0
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ENV NP_PORT=18765
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ENV ENABLE_RNAPLOT=1
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WORKDIR /app
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RUN apt-get update && apt-get install -y --no-install-recommends \
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autoconf \
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automake \
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build-essential \
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libgsl-dev \
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libtool \
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pkg-config \
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perl \
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&& rm -rf /var/lib/apt/lists/*
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COPY nupack/vendor/nupack-4.0.2.0/package /tmp/nupack-package
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COPY rna/ViennaRNA-2.7.2.tar.gz /tmp/ViennaRNA-2.7.2.tar.gz
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RUN cd /tmp \
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&& tar -xzf ViennaRNA-2.7.2.tar.gz \
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&& cd ViennaRNA-2.7.2 \
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&& ./configure --without-python --without-perl \
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&& make -j"$(nproc)" \
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&& make install \
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&& ldconfig \
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&& rm -rf /tmp/ViennaRNA-2.7.2 /tmp/ViennaRNA-2.7.2.tar.gz
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RUN python -m pip install --no-cache-dir \
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numpy==2.4.6 \
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scipy==1.17.1 \
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pandas==3.0.3 \
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pyyaml==6.0.3 \
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jinja2==3.1.6 \
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/tmp/nupack-package/nupack-4.0.2.0-cp312-cp312-linux_x86_64.whl
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RUN python -m pip install --no-cache-dir redis==7.4.0
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WORKDIR /app/service
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COPY service /app/service
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EXPOSE 18765
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CMD ["python", "server.py"]
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