53 lines
1.3 KiB
Docker
53 lines
1.3 KiB
Docker
FROM python:3.12-slim
|
|
|
|
ENV PYTHONDONTWRITEBYTECODE=1
|
|
ENV PYTHONUNBUFFERED=1
|
|
ENV NP_HOST=0.0.0.0
|
|
ENV NP_PORT=18765
|
|
ENV ENABLE_RNAPLOT=1
|
|
|
|
WORKDIR /app
|
|
|
|
RUN apt-get update && apt-get install -y --no-install-recommends \
|
|
autoconf \
|
|
automake \
|
|
build-essential \
|
|
libgsl-dev \
|
|
libtool \
|
|
pkg-config \
|
|
perl \
|
|
&& rm -rf /var/lib/apt/lists/*
|
|
|
|
COPY nupack/vendor/nupack-4.1.0.1/package /tmp/nupack-package
|
|
COPY rna/ViennaRNA-2.7.2.tar.gz /tmp/ViennaRNA-2.7.2.tar.gz
|
|
|
|
RUN cd /tmp \
|
|
&& tar -xzf ViennaRNA-2.7.2.tar.gz \
|
|
&& cd ViennaRNA-2.7.2 \
|
|
&& ./configure --without-python --without-perl \
|
|
&& make -j"$(nproc)" \
|
|
&& make install \
|
|
&& ldconfig \
|
|
&& rm -rf /tmp/ViennaRNA-2.7.2 /tmp/ViennaRNA-2.7.2.tar.gz
|
|
|
|
RUN python -m pip install --no-cache-dir \
|
|
numpy==2.4.6 \
|
|
scipy==1.17.1 \
|
|
pandas==3.0.3 \
|
|
pyyaml==6.0.3 \
|
|
jinja2==3.1.6 \
|
|
/tmp/nupack-package/nupack-4.1.0.1-cp312-cp312-linux_x86_64.whl
|
|
|
|
RUN python -m pip install --no-cache-dir redis==7.4.0
|
|
|
|
ARG NP_APP_VERSION=v5.4-nupack4.1.0.1
|
|
LABEL org.opencontainers.image.title="NP Replica" \
|
|
org.opencontainers.image.version="${NP_APP_VERSION}" \
|
|
org.opencontainers.image.description="NUPACK 4.1 mixed-material analysis and design service"
|
|
|
|
WORKDIR /app/service
|
|
COPY service /app/service
|
|
|
|
EXPOSE 18765
|
|
|
|
CMD ["python", "server.py"]
|