__pycache__/ *.py[cod] .pytest_cache/ .mypy_cache/ .DS_Store .env .sisyphus/ ltest.sh # Local exports and captured reference site assets are not needed to rebuild the service. nupack-history-*.json NUPACK.html NUPACK_files/ 1.png # The Docker build uses the vendored cp312 Linux x86_64 wheel plus the ViennaRNA tarball. rna/ViennaRNA-2.7.2/ rna/nupack-*.zip nupack/vendor/nupack-4.1.0.1/source/ nupack/vendor/nupack-4.1.0.1/package/*.whl # Runtime state mounted from Docker containers. runtime/redis/ runtime/account/