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Optimize nupack service startup and compute

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Lihatoo 2026-05-28 01:04:44 +08:00
commit e1b3156754
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rna/nupack代码示例.txt Normal file
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model1 = Model(material='dna', celsius=37,sodium=0.1, magnesium=0.02)
Y1 = Strand('CGTTAACGCAGTGAGGACGGTAGTTTGTCGTTCCATCGCACC', name='Y1')
Y2 = Strand('CGTTAACGGGTGCGATGGAACGACTTTCGACAGGCCTGGTGTAATTTCACCCATGTTAGTCGA', name='Y2')
Y3 = Strand('ATACGGAAAATGGAGATAGGAAGAGTACAATGTCAGCGATAAATTCCGTATACGACACCAGGCCTGTCGATTACTACCGTCCTCACTG', name='Y3')
t1 = Tube({Y1: 1e-8, Y2: 1e-8, Y3:1e-8 },complexes=SetSpec(max_size=4), name='Tube 1')
my_result = tube_analysis(tubes=[t1], model=model1,
compute=['pfunc', 'pairs', 'mfe', 'sample', 'subopt'])
print(my_result)