Optimize nupack service startup and compute

Dockerfile

@@ -0,0 +1,48 @@
+FROM python:3.12-slim
+
+ENV PYTHONDONTWRITEBYTECODE=1
+ENV PYTHONUNBUFFERED=1
+ENV NP_HOST=0.0.0.0
+ENV NP_PORT=18765
+ENV ENABLE_RNAPLOT=1
+
+WORKDIR /app
+
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    autoconf \
+    automake \
+    build-essential \
+    libgsl-dev \
+    libtool \
+    pkg-config \
+    perl \
+    && rm -rf /var/lib/apt/lists/*
+
+COPY nupack/vendor/nupack-4.0.2.0/package /tmp/nupack-package
+COPY rna/ViennaRNA-2.7.2.tar.gz /tmp/ViennaRNA-2.7.2.tar.gz
+
+RUN cd /tmp \
+    && tar -xzf ViennaRNA-2.7.2.tar.gz \
+    && cd ViennaRNA-2.7.2 \
+    && ./configure --without-python --without-perl \
+    && make -j"$(nproc)" \
+    && make install \
+    && ldconfig \
+    && rm -rf /tmp/ViennaRNA-2.7.2 /tmp/ViennaRNA-2.7.2.tar.gz
+
+RUN python -m pip install --no-cache-dir \
+    numpy \
+    scipy \
+    pandas \
+    pyyaml \
+    jinja2 \
+    /tmp/nupack-package/nupack-4.0.2.0-cp312-cp312-linux_x86_64.whl
+
+RUN python -m pip install --no-cache-dir redis
+
+WORKDIR /app/service
+COPY service /app/service
+
+EXPOSE 18765
+
+CMD ["python", "server.py"]