升级 NUPACK 4.1 并支持混合材料设计
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33 changed files with 5830 additions and 466 deletions
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.gitignore
vendored
10
.gitignore
vendored
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@ -3,6 +3,9 @@ __pycache__/
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.pytest_cache/
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.mypy_cache/
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.DS_Store
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.env
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.sisyphus/
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ltest.sh
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# Local exports and captured reference site assets are not needed to rebuild the service.
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nupack-history-*.json
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@ -12,10 +15,9 @@ NUPACK_files/
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# The Docker build uses the vendored cp312 Linux x86_64 wheel plus the ViennaRNA tarball.
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rna/ViennaRNA-2.7.2/
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rna/nupack-4.0.2.0.zip
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nupack/vendor/nupack-4.0.2.0/source/
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nupack/vendor/nupack-4.0.2.0/package/*.whl
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!nupack/vendor/nupack-4.0.2.0/package/nupack-4.0.2.0-cp312-cp312-linux_x86_64.whl
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rna/nupack-*.zip
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nupack/vendor/nupack-4.1.0.1/source/
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nupack/vendor/nupack-4.1.0.1/package/*.whl
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# Runtime state mounted from Docker containers.
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runtime/redis/
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runtime/account/
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